Fastq (p.biocaml.0.11.2.doc.biocaml.ez.Biocaml

Sourcetype nonrec item = Biocaml_unix.Fastq.item

Sourceval split_name : string -> string * string option

val read : 
  Biocaml_unix.Future_unix.Reader.t ->
  Biocaml_unix.Fastq.item CFStream.Stream.t

Source

val write : 
  Biocaml_unix.Future_unix.Writer.t ->
  Biocaml_unix.Fastq.item Biocaml_unix.Future_unix.Pipe.Reader.t ->
  unit Biocaml_unix.Future_unix.Deferred.t

Source

val write_file : 
  ?perm:int ->
  ?append:bool ->
  string ->
  Biocaml_unix.Fastq.item Biocaml_unix.Future_unix.Pipe.Reader.t ->
  unit Biocaml_unix.Future_unix.Deferred.t

Sourcemodule Illumina : sig ... end

Sourceval item_to_string : Biocaml_unix.Fastq.item -> string

Sourceval name_of_line : ?pos:Biocaml_unix.Pos.t -> Biocaml_unix.Line.t -> string

Sourceval sequence_of_line : ?pos:Biocaml_unix.Pos.t -> Biocaml_unix.Line.t -> string

Sourceval comment_of_line : ?pos:Biocaml_unix.Pos.t -> Biocaml_unix.Line.t -> string

Source

val qualities_of_line : 
  ?pos:Biocaml_unix.Pos.t ->
  ?sequence:string ->
  Biocaml_unix.Line.t ->
  string