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open Bistro
class type bam = object
inherit binary_file
method format : [`bam]
end
class type bed3 = object
inherit tsv
method header : [`no]
method f1 : string
method f2 : int
method f3 : int
end
class type bed4 = object
inherit bed3
method f4 : string
end
class type bed5 = object
inherit bed4
method f5 : int
end
class type bed6 = object
inherit bed5
method f6 : [ `Plus | `Minus | `Unknown ]
end
class type fasta = object
inherit text
method format : [`fasta]
end
class type fastq = object
inherit text
method format : [`fastq]
end
class type sanger_fastq = object
inherit fastq
method phred_encoding : [`sanger]
end
class type solexa_fastq = object
inherit fastq
method phred_encoding : [`solexa]
end
class type phred64_fastq = object
inherit fastq
method phred_encoding : [`phred64]
end
class type gff = object
inherit tsv
method header : [`no]
method f1 : string
method f2 : string
method f3 : string
method f4 : int
method f5 : int
method f6 : float
method f7 : [`Plus | `Minus]
method f8 : [`frame0 | `frame1 | `frame2]
method f9 : string
end
class type gff2 = object
inherit gff
method version : [`v2]
end
class type gff3 = object
inherit gff
method version : [`v3]
end
class type sam = object
inherit text
method format : [`sam]
end
class type sra = object
inherit binary_file
method format : [`sra]
end
class type nhx = object
inherit text
method format : [`nhx]
end
class type newick = object
inherit text
method format : [`newick]
end
class type nexus = object
inherit text
method format : [`nexus]
end
class type phylip = object
inherit text
method format : [`phylip]
end