Biotk (p.biotk.0.0.0.doc.biotk.Biotk)

Sourcemodule Bai : sig ... end

Sourcemodule Bam_iterator : sig ... end

Sourcemodule Bed : sig ... end

Sourcemodule Cisbp : sig ... end

Sourcemodule Dataframe : sig ... end

Sourcemodule Dna_sequence : sig ... end

Sourcemodule Encode : sig ... end

Sourcemodule Fasta : sig ... end

Sourcemodule Fastq : sig ... end

Sourcemodule FeatureCounts : sig ... end

Sourcemodule GAnnot : sig ... end

Data structures to represent sets of (possibly annotated) genomic regions

Sourcemodule GLoc : sig ... end

Sourcemodule Gcf : sig ... end

GCF = Genomic coordinates format loosely defined as a TSV format whose first column represents a location with the syntax <chr>:<start>-<end>

Sourcemodule Gene : sig ... end

Sourcemodule Gff : sig ... end

Sourcemodule Gtf : sig ... end

Sourcemodule Idr : sig ... end

Utilities for the {https://github.com/nboley/idrIDR program

Sourcemodule Igv : sig ... end

Sourcemodule Interval_union : sig ... end

Sourcemodule Jaspar : sig ... end

Sourcemodule Let_syntax : sig ... end

Sourcemodule Line_oriented : sig ... end

Sourcemodule List1 : sig ... end

Sourcemodule Macs : sig ... end

https://github.com/taoliu/MACS/blob/macs_v1/README.rst

Sourcemodule Macs2 : sig ... end

Interaction with MACS2 peak caller

Sourcemodule Misc : sig ... end

Sourcemodule NarrowPeak : sig ... end

Sourcemodule Ncbi_genome : sig ... end

Sourcemodule Nucleotide : sig ... end

Sourcemodule Phylo_tree_draw : sig ... end

Sourcemodule Pipe_parsers : sig ... end

Sourcemodule Profile_matrix : sig ... end

Sourcemodule Pwm : sig ... end

Position-weight matrix

Sourcemodule Pwm_stats : sig ... end

Implementation of https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2238751/

Sourcemodule Range : sig ... end

Sourcemodule Sam : sig ... end

Sourcemodule Ucsc_genome_browser : sig ... end

Sourcemodule Utils : sig ... end

Sourcemodule Wfa : sig ... end