Kappa_terms.MatchingSourceInjection from a pattern in the mixture
val reconstruct_renaming :
debug_mode:bool ->
Pattern.Env.t ->
Kappa_site_graphs.Edges.t ->
Pattern.id ->
int ->
Kappa_data_structures.Renaming.treconstruct_renaming domain graph cc root
val reconstruct :
debug_mode:bool ->
Pattern.Env.t ->
Kappa_site_graphs.Edges.t ->
t ->
int ->
Pattern.id ->
int ->
t optionreconstruct domain graph matching_of_previous_cc cc_id_in_rule cc root
val is_root_of :
debug_mode:bool ->
Pattern.Env.t ->
Kappa_site_graphs.Edges.t ->
Kappa_site_graphs.Agent.t ->
Pattern.id ->
boolval roots_of :
debug_mode:bool ->
Pattern.Env.t ->
Kappa_site_graphs.Edges.t ->
Pattern.id ->
Kappa_data_structures.IntCollection.tval elements_with_types :
Pattern.Env.t ->
Pattern.id array ->
t ->
Kappa_site_graphs.Agent.t list arrayval observables_from_agent :
Pattern.Env.t ->
Kappa_site_graphs.Edges.t ->
(((Pattern.id * (int * int)) list * Kappa_data_structures.Operator.DepSet.t)
* cache) ->
Kappa_site_graphs.Agent.t ->
((Pattern.id * (int * int)) list * Kappa_data_structures.Operator.DepSet.t)
* cacheobservables_from_free domain graph sort agent the int * int in the return list and the following ones is a Instantiation.concrete
val observables_from_free :
debug_mode:bool ->
Pattern.Env.t ->
Kappa_site_graphs.Edges.t ->
(((Pattern.id * (int * int)) list * Kappa_data_structures.Operator.DepSet.t)
* cache) ->
Kappa_site_graphs.Agent.t ->
int ->
((Pattern.id * (int * int)) list * Kappa_data_structures.Operator.DepSet.t)
* cacheobservables_from_free domain graph sort agent site
val observables_from_internal :
debug_mode:bool ->
Pattern.Env.t ->
Kappa_site_graphs.Edges.t ->
(((Pattern.id * (int * int)) list * Kappa_data_structures.Operator.DepSet.t)
* cache) ->
Kappa_site_graphs.Agent.t ->
int ->
int ->
((Pattern.id * (int * int)) list * Kappa_data_structures.Operator.DepSet.t)
* cacheobservables_from_internal domain graph sort agent site internal_state
val observables_from_link :
debug_mode:bool ->
Pattern.Env.t ->
Kappa_site_graphs.Edges.t ->
(((Pattern.id * (int * int)) list * Kappa_data_structures.Operator.DepSet.t)
* cache) ->
Kappa_site_graphs.Agent.t ->
int ->
Kappa_site_graphs.Agent.t ->
int ->
((Pattern.id * (int * int)) list * Kappa_data_structures.Operator.DepSet.t)
* cacheobservables_from_link domain graph sort ag site sort' ag' site'