Module Biocaml_unix.Jaspar

Access to Jaspar database

type collection =
  1. | Core
  2. | Phylofacts
  3. | CNE
  4. | PBM
  5. | PBM_HOMEO
  6. | PBM_HLH
  7. | FAM
  8. | SPLICE
  9. | POLII

The possible kinds of motifs.

type motif = private {
  1. id : string;
  2. jaspar_id : string;
  3. collection : collection;
  4. factor_name : string;
  5. factor_class : string;
  6. family : string option;
  7. comment : string option;
  8. medline : string;
  9. matrix : int array array;
}

A Jaspar motif

val load : string -> motif list

Loads a database in SQL dump format, as available at Jaspar website