Module Biocaml_unix.Sgr

Sequence Graph (SGR) files.

type t
exception Bad of string
val of_channel : ?chr_map:(string -> string) -> ?increment_bp:int -> Core_kernel.In_channel.t -> t
val of_file : ?chr_map:(string -> string) -> ?increment_bp:int -> string -> t
val of_list : (string * int * float) list -> t
val of_chr_lists : (string * (int * float) list) list -> t
val to_channel : ?chr_map:(string -> string) -> ?increment_bp:int -> t -> Core_kernel.Out_channel.t -> unit
val to_file : ?chr_map:(string -> string) -> ?increment_bp:int -> t -> string -> unit

Items will be printed in ascending order by (chr,coord).

val to_list : t -> (string * int * float) list

Items will be returned in ascending order by (chr,coord).

val to_chr_lists : t -> (string * (int * float) list) list

Outer list will be in ascending order by chr, and inner lists will be in ascending order by coord.