Bedtools (p.bistro.0.5.0.doc.bistro.bioinfo.Bistro

val img : Bistro.Shell_dsl.container_image list

type 'a input

val bed : bed3 input

val gff : gff input

module Cmd : sig ... end

val slop : 
  ?strand:bool ->
  ?header:bool ->
  mode:
    [ `both of int
    | `left of int
    | `right of int
    | `both_pct of float
    | `left_pct of float
    | `right_pct of float ] ->
  'a input ->
  'a Bistro.pworkflow ->
  Ucsc_gb.chrom_sizes Bistro.pworkflow ->
  'a Bistro.pworkflow

val intersect : 
  ?ubam:bool ->
  ?wa:bool ->
  ?wb:bool ->
  ?loj:bool ->
  ?wo:bool ->
  ?wao:bool ->
  ?u:bool ->
  ?c:bool ->
  ?v:bool ->
  ?f:float ->
  ?_F:float ->
  ?r:bool ->
  ?e:bool ->
  ?s:bool ->
  ?_S:bool ->
  ?split:bool ->
  ?sorted:bool ->
  ?g:Ucsc_gb.chrom_sizes Bistro.pworkflow ->
  ?header:bool ->
  ?filenames:bool ->
  ?sortout:bool ->
  'a input ->
  'a Bistro.pworkflow ->
  bed3 Bistro.pworkflow list ->
  'a Bistro.pworkflow

val bamtobed : 
  ?bed12:bool ->
  ?split:bool ->
  ?splitD:bool ->
  ?ed:bool ->
  ?tag:bool ->
  ?cigar:bool ->
  bam Bistro.pworkflow ->
  bed6 Bistro.pworkflow

val closest : 
  ?strand:[ `same | `opposite ] ->
  ?io:bool ->
  ?iu:bool ->
  ?id:bool ->
  ?fu:bool ->
  ?fd:bool ->
  ?ties:[ `all | `first | `last ] ->
  ?mdb:[ `each | `all ] ->
  ?k:int ->
  ?header:bool ->
  'a input ->
  'a Bistro.pworkflow ->
  bed3 Bistro.pworkflow list ->
  'a Bistro.pworkflow