Kallisto (p.bistro.0.5.0.doc.bistro.bioinfo.Bistro

class type index = object ... end

class type abundance_table = object ... end

val img : Bistro.Shell_dsl.container_image list

val index : fasta Bistro.pworkflow list -> index Bistro.pworkflow

val quant : 
  ?bootstrap_samples:int ->
  ?threads:int ->
  ?fragment_length:float ->
  ?sd:float ->
  index Bistro.pworkflow ->
  fq1:
    [ `fq of sanger_fastq Bistro.pworkflow
    | `fq_gz of sanger_fastq Bistro.gz Bistro.pworkflow ] ->
  ?fq2:
    [ `fq of sanger_fastq Bistro.pworkflow
    | `fq_gz of sanger_fastq Bistro.gz Bistro.pworkflow ] ->
  unit ->
  [ `kallisto_output ] Bistro.dworkflow

val abundance : 
  [ `kallisto_output ] Bistro.dworkflow ->
  abundance_table Bistro.pworkflow

val merge_eff_counts : 
  sample_ids:string list ->
  kallisto_outputs:abundance_table Bistro.pworkflow list ->
  Bistro.tsv Bistro.pworkflow

val merge_tpms : 
  sample_ids:string list ->
  kallisto_outputs:abundance_table Bistro.pworkflow list ->
  Bistro.tsv Bistro.pworkflow