Samtools (p.bistro.0.5.0.doc.bistro.bioinfo.Bistro

type 'a format

val bam : bam format

val sam : sam format

val sort : 
  ?on:[ `name | `position ] ->
  bam Bistro.pworkflow ->
  bam Bistro.pworkflow

val indexed_bam_of_sam : sam Bistro.pworkflow -> indexed_bam Bistro.pworkflow

val indexed_bam_of_bam : bam Bistro.pworkflow -> indexed_bam Bistro.pworkflow

val indexed_bam_to_bam : indexed_bam Bistro.pworkflow -> bam Bistro.pworkflow

val bam_of_sam : sam Bistro.pworkflow -> bam Bistro.pworkflow

val sam_of_bam : bam Bistro.pworkflow -> sam Bistro.pworkflow

val view : 
  output:'o format ->
  ?h:bool ->
  ?_H:bool ->
  ?q:int ->
  < file_kind : [ `regular ] ; format : [< `bam | `sam ].. > Bistro.pworkflow ->
  'o Bistro.pworkflow