Star (p.bistro.0.5.0.doc.bistro.bioinfo.Bistro

val genomeGenerate : fasta Bistro.pworkflow -> [ `star_index ] Bistro.dworkflow

val alignReads : 
  ?max_mem:[ `GB of int ] ->
  ?outFilterMismatchNmax:int ->
  ?outFilterMultimapNmax:int ->
  ?outSAMstrandField:[ `None | `intronMotif ] ->
  ?alignIntronMax:int ->
  [ `star_index ] Bistro.dworkflow ->
  [ `single_end of sanger_fastq Bistro.pworkflow
  | `paired_end of
    sanger_fastq Bistro.pworkflow * sanger_fastq Bistro.pworkflow ] ->
  bam Bistro.pworkflow