Tophat (p.bistro.0.5.0.doc.bistro.bioinfo.Bistro

class type output = object ... end

val tophat1 : 
  ?color:bool ->
  Bowtie.index Bistro.pworkflow ->
  [ `single_end of fastq Bistro.pworkflow list
  | `paired_end of
    (fastq as 'a) Bistro.pworkflow list * 'a Bistro.pworkflow list ] ->
  output Bistro.pworkflow

val tophat2 : 
  Bowtie2.index Bistro.pworkflow ->
  [ `single_end of fastq Bistro.pworkflow list
  | `paired_end of
    (fastq as 'a) Bistro.pworkflow list * 'a Bistro.pworkflow list ] ->
  output Bistro.pworkflow

val accepted_hits : output Bistro.pworkflow -> bam Bistro.pworkflow

val junctions : output Bistro.pworkflow -> bed6 Bistro.pworkflow