Macs2 (p.bistro.0.5.0.doc.bistro.bioinfo.Bistro

val pileup : 
  ?extsize:int ->
  ?both_direction:bool ->
  bam Bistro.pworkflow ->
  Ucsc_gb.bedGraph Bistro.pworkflow

type gsize = [

| `hs
| `mm
| `ce
| `dm
| `gsize of int

]

type keep_dup = [

| `all
| `auto
| `int of int

]

type _ format

val sam : sam format

val bam : bam format

class type output = object ... end

class type narrow_output = object ... end

class type broad_output = object ... end

val callpeak : 
  ?pvalue:float ->
  ?qvalue:float ->
  ?gsize:gsize ->
  ?call_summits:bool ->
  ?fix_bimodal:bool ->
  ?mfold:(int * int) ->
  ?extsize:int ->
  ?nomodel:bool ->
  ?bdg:bool ->
  ?control:'a Bistro.pworkflow list ->
  ?keep_dup:keep_dup ->
  'a format ->
  'a Bistro.pworkflow list ->
  narrow_output Bistro.pworkflow

class type peaks_xls = object ... end

val peaks_xls : output Bistro.pworkflow -> peaks_xls Bistro.pworkflow

class type narrow_peaks = object ... end

val narrow_peaks : 
  narrow_output Bistro.pworkflow ->
  narrow_peaks Bistro.pworkflow

class type peak_summits = object ... end

val peak_summits : output Bistro.pworkflow -> peak_summits Bistro.pworkflow

val callpeak_broad : 
  ?pvalue:float ->
  ?qvalue:float ->
  ?gsize:gsize ->
  ?call_summits:bool ->
  ?fix_bimodal:bool ->
  ?mfold:(int * int) ->
  ?extsize:int ->
  ?nomodel:bool ->
  ?bdg:bool ->
  ?control:'a Bistro.pworkflow list ->
  ?keep_dup:keep_dup ->
  'a format ->
  'a Bistro.pworkflow list ->
  broad_output Bistro.pworkflow

class type broad_peaks = object ... end

val broad_peaks : broad_output Bistro.pworkflow -> broad_peaks Bistro.pworkflow